STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmigd1Transmembrane and immunoglobulin domain containing 1. (261 aa)    
Predicted Functional Partners:
Guca2a
Guanylate cyclase activator 2a (guanylin).
   
  
 0.770
Clrn3
Clarin 3.
   
  
 0.588
Slc10a2
Solute carrier family 10, member 2.
   
  
 0.554
Ms4a12
Membrane-spanning 4-domains, subfamily A, member 12.
      
 0.516
Gm20498
Predicted gene 20498.
      
 0.474
Nectin4
Nectin cell adhesion molecule 4.
      
 0.457
Mrm3
Mitochondrial rRNA methyltransferase 3.
      
 0.402
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.