STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hdac5Histone deacetylase 5. (1120 aa)    
Predicted Functional Partners:
Ncor2
Nuclear receptor co-repressor 2.
    
 0.989
Ncor1
Nuclear receptor co-repressor 1.
    
 0.985
Hdac4
Histone deacetylase 4.
  
 
0.965
Hdac2
Histone deacetylase 2.
  
 
0.932
Arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.928
Arid4b
AT rich interactive domain 4B (RBP1-like).
    
 0.928
Mef2c
Myocyte enhancer factor 2C.
   
 
 0.909
Ankra2
Ankyrin repeat, family A (RFXANK-like), 2.
    
 0.897
Runx2
Runt related transcription factor 2.
    
 0.892
Smad3
SMAD family member 3.
    
 0.891
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.