STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbf1Fas (TNFRSF6) binding factor 1. (1169 aa)    
Predicted Functional Partners:
Sclt1
Sodium channel and clathrin linker 1.
    
 0.986
Cep83
Centrosomal protein 83.
    
 0.985
Cep89
Centrosomal protein 89.
     
 0.981
Cep164
Centrosomal protein 164.
   
 
 0.978
Odf2
Outer dense fiber of sperm tails 2.
     
 0.948
Nin
Ninein.
     
 0.947
Polr2a
Polymerase (RNA) II (DNA directed) polypeptide A.
    
 0.946
Polr2b
Polymerase (RNA) II (DNA directed) polypeptide B.
   
 0.935
Dxo
Decapping exoribonuclease.
    
 
 0.881
Xrn2
5'-3' exoribonuclease 2.
    
 
 0.881
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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