STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Foxj1Forkhead box J1. (421 aa)    
Predicted Functional Partners:
Rfx3
Regulatory factor X, 3 (influences HLA class II expression).
    
 
 0.833
Rfx2
Regulatory factor X, 2 (influences HLA class II expression).
    
 
 0.796
Scgb1a1
Secretoglobin, family 1A, member 1 (uteroglobin).
      
 0.708
Mcidas
Multiciliate differentiation and DNA synthesis associated cell cycle protein.
      
 0.670
Sftpc
Surfactant associated protein C.
      
 0.613
MGP_SPRETEiJ_P0048566
annotation not available
      
 0.612
Ccno
Cyclin O.
    
 0.598
Krt5
Keratin 5.
    
 0.597
Gmnc
Geminin coiled-coil domain containing.
      
 0.597
Trim29
Tripartite motif-containing 29.
    
 0.577
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.