STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Riox1Ribosomal oxygenase 1. (603 aa)    
Predicted Functional Partners:
Phf19
PHD finger protein 19.
      
 0.855
Sp7
Sp7 transcription factor 7.
    
 
 0.775
Rpl27a
Ribosomal protein L27A.
    
 
 0.612
Tyw5
tRNA-yW synthesizing protein 5.
      
 0.567
Mrpl2
Mitochondrial ribosomal protein L2.
    
 
 0.559
Cul7
Cullin 7.
    
 
 0.559
Jmjd4
Jumonji domain containing 4.
      
 0.525
Ogfod1
2-oxoglutarate and iron-dependent oxygenase domain containing 1.
      
 0.509
Skida1
SKI/DACH domain containing 1.
      
 0.475
Kdm2b
Lysine (K)-specific demethylase 2B.
      
 0.475
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.