STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fcf1FCF1 rRNA processing protein. (198 aa)    
Predicted Functional Partners:
Utp11
UTP11 small subunit processome component.
   
 0.999
Utp3
UTP3 small subunit processome component.
   
 0.999
Emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
 0.999
Utp20
UTP20 small subunit processome component.
   
 0.998
Krr1
KRR1, small subunit (SSU) processome component, homolog (yeast).
   
 0.998
Ngdn
Neuroguidin, EIF4E binding protein.
   
 0.998
Wdr46
WD repeat domain 46.
   
 0.998
Imp3
IMP3, U3 small nucleolar ribonucleoprotein.
   
 0.998
Nop58
NOP58 ribonucleoprotein.
   
 0.997
Dcaf13
DDB1 and CUL4 associated factor 13.
   
  0.997
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.