STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EgflamEGF-like, fibronectin type III and laminin G domains. (1017 aa)    
Predicted Functional Partners:
Dag1
Dystroglycan 1.
    
 0.873
Lrit3
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3.
    
 0.771
Sdc1
Syndecan 1.
     
 0.718
Rps27a
Ribosomal protein S27A.
    
  0.704
Lrit1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1.
    
 0.701
Svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
    
 0.701
Rpl26
Ribosomal protein L26.
    
  0.689
Rpl14
Ribosomal protein L14.
    
  0.682
Rpl19
Ribosomal protein L19.
    
  0.679
Mrto4
mRNA turnover 4, ribosome maturation factor.
   
  0.679
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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