STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ArvcfArmadillo repeat gene deleted in velocardiofacial syndrome. (962 aa)    
Predicted Functional Partners:
Fmr1
Fragile X mental retardation 1.
    
 0.910
Pabpc1
poly(A) binding protein, cytoplasmic 1.
    
  0.902
Stau2
Staufen double-stranded RNA binding protein 2.
    
  0.900
Pkp1
Plakophilin 1.
     
0.900
Pkp3
Plakophilin 3.
     
0.900
Ybx1
Y box protein 1.
     
 0.896
Ctnnb1
Catenin (cadherin associated protein), beta 1.
    
0.828
Cdh1
Cadherin 1.
    
 0.796
Jup
Junction plakoglobin.
   
0.769
Zbtb33
Zinc finger and BTB domain containing 33.
    
 
 0.758
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.