STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbx1T-box 1. (488 aa)    
Predicted Functional Partners:
Cfap54
Cilia and flagella associated protein 54.
   
  
 0.717
Rchy1
Ring finger and CHY zinc finger domain containing 1.
   
    0.708
Tmem26
Transmembrane protein 26.
      
 0.668
Cidea
Cell death-inducing DNA fragmentation factor, alpha subunit-like effector A.
      
 0.612
Ucp1
Uncoupling protein 1 (mitochondrial, proton carrier).
      
 0.611
Hmx3
H6 homeobox 3.
    
 
 0.601
Prdm16
PR domain containing 16.
   
  
 0.579
Ppargc1a
Peroxisome proliferative activated receptor, gamma, coactivator 1 alpha.
      
 0.505
Nkx2-5
NK2 homeobox 5.
    
 
 0.504
Chd7
Chromodomain helicase DNA binding protein 7.
      
 0.478
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.