Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Abl1 | MGP_SPRETEiJ_P0018405 | MGP_SPRETEiJ_P0053028 | MGP_SPRETEiJ_P0018405 | C-abl oncogene 1, non-receptor tyrosine kinase. | annotation not available | 0.471 |
Abl1 | Robo1 | MGP_SPRETEiJ_P0053028 | MGP_SPRETEiJ_P0043932 | C-abl oncogene 1, non-receptor tyrosine kinase. | Roundabout guidance receptor 1. | 0.952 |
Abl1 | Slit1 | MGP_SPRETEiJ_P0053028 | MGP_SPRETEiJ_P0050782 | C-abl oncogene 1, non-receptor tyrosine kinase. | Slit guidance ligand 1. | 0.601 |
Abl1 | Slit2 | MGP_SPRETEiJ_P0053028 | MGP_SPRETEiJ_P0070736 | C-abl oncogene 1, non-receptor tyrosine kinase. | Slit guidance ligand 2. | 0.654 |
Abl1 | Slit3 | MGP_SPRETEiJ_P0053028 | MGP_SPRETEiJ_P0027503 | C-abl oncogene 1, non-receptor tyrosine kinase. | Slit guidance ligand 3. | 0.601 |
MGP_SPRETEiJ_P0018405 | Abl1 | MGP_SPRETEiJ_P0018405 | MGP_SPRETEiJ_P0053028 | annotation not available | C-abl oncogene 1, non-receptor tyrosine kinase. | 0.471 |
MGP_SPRETEiJ_P0018405 | Robo1 | MGP_SPRETEiJ_P0018405 | MGP_SPRETEiJ_P0043932 | annotation not available | Roundabout guidance receptor 1. | 0.948 |
MGP_SPRETEiJ_P0020767 | Robo1 | MGP_SPRETEiJ_P0020767 | MGP_SPRETEiJ_P0043932 | annotation not available | Roundabout guidance receptor 1. | 0.961 |
MGP_SPRETEiJ_P0020767 | Srgap1 | MGP_SPRETEiJ_P0020767 | MGP_SPRETEiJ_P0026180 | annotation not available | SLIT-ROBO Rho GTPase activating protein 1. | 0.956 |
MGP_SPRETEiJ_P0020767 | Srgap3 | MGP_SPRETEiJ_P0020767 | MGP_SPRETEiJ_P0078394 | annotation not available | SLIT-ROBO Rho GTPase activating protein 3. | 0.950 |
Nrp1 | Robo1 | MGP_SPRETEiJ_P0090140 | MGP_SPRETEiJ_P0043932 | Neuropilin 1. | Roundabout guidance receptor 1. | 0.962 |
Nrp1 | Slit2 | MGP_SPRETEiJ_P0090140 | MGP_SPRETEiJ_P0070736 | Neuropilin 1. | Slit guidance ligand 2. | 0.514 |
Robo1 | Abl1 | MGP_SPRETEiJ_P0043932 | MGP_SPRETEiJ_P0053028 | Roundabout guidance receptor 1. | C-abl oncogene 1, non-receptor tyrosine kinase. | 0.952 |
Robo1 | MGP_SPRETEiJ_P0018405 | MGP_SPRETEiJ_P0043932 | MGP_SPRETEiJ_P0018405 | Roundabout guidance receptor 1. | annotation not available | 0.948 |
Robo1 | MGP_SPRETEiJ_P0020767 | MGP_SPRETEiJ_P0043932 | MGP_SPRETEiJ_P0020767 | Roundabout guidance receptor 1. | annotation not available | 0.961 |
Robo1 | Nrp1 | MGP_SPRETEiJ_P0043932 | MGP_SPRETEiJ_P0090140 | Roundabout guidance receptor 1. | Neuropilin 1. | 0.962 |
Robo1 | Robo3 | MGP_SPRETEiJ_P0043932 | MGP_SPRETEiJ_P0090864 | Roundabout guidance receptor 1. | Roundabout guidance receptor 3. | 0.946 |
Robo1 | Slit1 | MGP_SPRETEiJ_P0043932 | MGP_SPRETEiJ_P0050782 | Roundabout guidance receptor 1. | Slit guidance ligand 1. | 0.999 |
Robo1 | Slit2 | MGP_SPRETEiJ_P0043932 | MGP_SPRETEiJ_P0070736 | Roundabout guidance receptor 1. | Slit guidance ligand 2. | 0.999 |
Robo1 | Slit3 | MGP_SPRETEiJ_P0043932 | MGP_SPRETEiJ_P0027503 | Roundabout guidance receptor 1. | Slit guidance ligand 3. | 0.999 |
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