STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBrachyury, T-box transcription factor T. (436 aa)    
Predicted Functional Partners:
Eomes
Eomesodermin.
   
 
0.955
Bmp4
Bone morphogenetic protein 4.
     
 0.843
Noto
Notochord homeobox.
    
 0.773
Snai1
Snail family zinc finger 1.
    
 0.737
Tbx6
T-box 6.
   
 
 
0.712
Mixl1
Mix1 homeobox-like 1 (Xenopus laevis).
   
 
 0.709
Pou5f1
POU domain, class 5, transcription factor 1.
   
 0.666
Tbr1
T-box brain gene 1.
   
 
0.654
Foxh1
Forkhead box H1.
   
 
 0.610
Tbx10
T-box 10.
   
 
 
0.540
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.