STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Abca3ATP-binding cassette, sub-family A (ABC1), member 3. (1704 aa)    
Predicted Functional Partners:
Sftpc
Surfactant associated protein C.
      
 0.686
Sftpb
Surfactant associated protein B.
      
 0.646
Sftpa1
Surfactant associated protein A1.
      
 0.612
Cox15
Cytochrome c oxidase assembly protein 15.
    
 0.547
Abca16
ATP-binding cassette, sub-family A (ABC1), member 16.
  
  
 
0.522
Abca17
ATP-binding cassette, sub-family A (ABC1), member 17.
  
  
 
0.517
Nkx2-1
NK2 homeobox 1.
      
 0.516
Abca2
ATP-binding cassette, sub-family A (ABC1), member 2.
    
0.512
Sftpd
Surfactant associated protein D.
      
 0.511
Aqp5
Aquaporin 5.
      
 0.509
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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