STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hmcn2Hemicentin 2. (5100 aa)    
Predicted Functional Partners:
Hdgfl3
HDGF like 3.
    
 
 0.552
Lrit1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1.
    
 
0.511
Lrit3
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3.
    
 
0.511
H2-Oa
Histocompatibility 2, O region alpha locus.
    
  0.495
F12
Coagulation factor XII (Hageman factor).
    
  0.467
Habp2
Hyaluronic acid binding protein 2.
    
  0.467
Hgfac
Hepatocyte growth factor activator.
    
  0.467
Slc36a3
Solute carrier family 36 (proton/amino acid symporter), member 3.
      
 0.441
Lgr5
Leucine rich repeat containing G protein coupled receptor 5.
    
  0.425
Lgr4
Leucine-rich repeat-containing G protein-coupled receptor 4.
    
  0.425
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.