STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shox2Short stature homeobox 2. (331 aa)    
Predicted Functional Partners:
Tbx18
T-box18.
   
 
 0.736
Tbx3
T-box 3.
    
 
 0.644
Hcn4
Hyperpolarization-activated, cyclic nucleotide-gated K+ 4.
      
 0.641
Hcn3
Hyperpolarization-activated, cyclic nucleotide-gated K+ 3.
      
 0.639
Tbx15
T-box 15.
   
 
 0.592
Tbx22
T-box 22.
    
 
 0.588
Tbx5
T-box 5.
    
 
 0.559
Isl1
ISL1 transcription factor, LIM/homeodomain.
      
 0.517
Gja5
Gap junction protein, alpha 5.
      
 0.516
Prdm16
PR domain containing 16.
    
 
 0.466
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.