STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HdgfHeparin binding growth factor. (237 aa)    
Predicted Functional Partners:
Leo1
Leo1, Paf1/RNA polymerase II complex component.
     
 0.905
Mdk
Midkine.
      
 0.661
Cdk12
Cyclin-dependent kinase 12.
    
 0.655
Cdk13
Cyclin-dependent kinase 13.
    
 0.655
Ptn
Pleiotrophin.
      
 0.628
Ncl
Nucleolin.
    
 
 0.573
Cdyl
Chromodomain protein, Y chromosome-like.
    
 
 0.566
Ybx1
Y box protein 1.
   
 
 0.554
Ccnt2
Cyclin T2.
    
 0.532
Ccnq
Cyclin Q.
    
 0.532
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.