STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab42RAB42, member RAS oncogene family. (215 aa)    
Predicted Functional Partners:
Itsn2
Intersectin 2.
    
 0.919
Itsn1
Intersectin 1 (SH3 domain protein 1A).
    
 0.852
Chml
Choroideremia-like.
    
 0.741
Gdi2
Guanosine diphosphate (GDP) dissociation inhibitor 2.
    
 0.698
Gdi1
Guanosine diphosphate (GDP) dissociation inhibitor 1.
    
 0.698
Myo9b
Myosin IXb.
    
 0.689
MGP_SPRETEiJ_P0091783
annotation not available
    
 0.689
Cog6
Component of oligomeric golgi complex 6.
    
 0.671
Rabggtb
Rab geranylgeranyl transferase, b subunit.
    
 0.670
Cog8
Component of oligomeric golgi complex 8.
    
  0.663
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.