STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srrm1Serine/arginine repetitive matrix 1. (923 aa)    
Predicted Functional Partners:
Srrm2
Serine/arginine repetitive matrix 2.
   
 0.997
MGP_SPRETEiJ_P0034259
annotation not available
   
 0.992
Upf3b
UPF3 regulator of nonsense transcripts homolog B (yeast).
    
 0.992
Rnps1
Ribonucleic acid binding protein S1.
   
 0.988
Cdc40
Cell division cycle 40.
    
 0.983
Ddx39b
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B.
    
 0.983
Ppil2
Peptidylprolyl isomerase (cyclophilin)-like 2.
    
 0.980
Ppil1
Peptidylprolyl isomerase (cyclophilin)-like 1.
    
 0.980
Tcerg1
Transcription elongation regulator 1 (CA150).
   
 0.978
Alyref
Aly/REF export factor.
    
 0.977
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.