STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rbm48RNA binding motif protein 48. (413 aa)    
Predicted Functional Partners:
Armc7
Armadillo repeat containing 7.
  
 
 
 0.935
Tubgcp5
Tubulin, gamma complex associated protein 5.
    
 0.837
Prpf8
pre-mRNA processing factor 8.
    
   0.836
Snrnp40
Small nuclear ribonucleoprotein 40 (U5).
    
   0.836
Tubgcp6
Tubulin, gamma complex associated protein 6.
    
 0.800
Tubgcp3
Tubulin, gamma complex associated protein 3.
    
 0.800
Mccc2
methylcrotonoyl-Coenzyme A carboxylase 2 (beta).
   
 0.753
Pccb
Propionyl Coenzyme A carboxylase, beta polypeptide.
   
 0.753
Tubgcp4
Tubulin, gamma complex associated protein 4.
    
 0.748
Scnm1
Sodium channel modifier 1.
    
 
 0.668
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.