Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cd40lg | Gp1ba | MGP_SPRETEiJ_P0095266 | MGP_SPRETEiJ_P0029259 | CD40 ligand. | Glycoprotein 1b, alpha polypeptide. | 0.516 |
Cd40lg | Icam1 | MGP_SPRETEiJ_P0095266 | MGP_SPRETEiJ_P0090471 | CD40 ligand. | Intercellular adhesion molecule 1. | 0.626 |
Cd40lg | Itgb2 | MGP_SPRETEiJ_P0095266 | MGP_SPRETEiJ_P0024712 | CD40 ligand. | Integrin beta 2. | 0.587 |
Cd40lg | Scarb2 | MGP_SPRETEiJ_P0095266 | MGP_SPRETEiJ_P0071806 | CD40 ligand. | Scavenger receptor class B, member 2. | 0.511 |
Cd40lg | Sele | MGP_SPRETEiJ_P0095266 | MGP_SPRETEiJ_P0021910 | CD40 ligand. | Selectin, endothelial cell. | 0.494 |
Cd40lg | Sell | MGP_SPRETEiJ_P0095266 | MGP_SPRETEiJ_P0021914 | CD40 ligand. | Selectin, lymphocyte. | 0.612 |
Cd40lg | Selp | MGP_SPRETEiJ_P0095266 | MGP_SPRETEiJ_P0021916 | CD40 ligand. | Selectin, platelet. | 0.730 |
Cd40lg | Selplg | MGP_SPRETEiJ_P0095266 | MGP_SPRETEiJ_P0072603 | CD40 ligand. | Selectin, platelet (p-selectin) ligand. | 0.821 |
Cd40lg | Vcam1 | MGP_SPRETEiJ_P0095266 | MGP_SPRETEiJ_P0062495 | CD40 ligand. | Vascular cell adhesion molecule 1. | 0.569 |
Gp1ba | Cd40lg | MGP_SPRETEiJ_P0029259 | MGP_SPRETEiJ_P0095266 | Glycoprotein 1b, alpha polypeptide. | CD40 ligand. | 0.516 |
Gp1ba | Icam1 | MGP_SPRETEiJ_P0029259 | MGP_SPRETEiJ_P0090471 | Glycoprotein 1b, alpha polypeptide. | Intercellular adhesion molecule 1. | 0.557 |
Gp1ba | Itgb2 | MGP_SPRETEiJ_P0029259 | MGP_SPRETEiJ_P0024712 | Glycoprotein 1b, alpha polypeptide. | Integrin beta 2. | 0.546 |
Gp1ba | Sele | MGP_SPRETEiJ_P0029259 | MGP_SPRETEiJ_P0021910 | Glycoprotein 1b, alpha polypeptide. | Selectin, endothelial cell. | 0.469 |
Gp1ba | Selp | MGP_SPRETEiJ_P0029259 | MGP_SPRETEiJ_P0021916 | Glycoprotein 1b, alpha polypeptide. | Selectin, platelet. | 0.995 |
Gp1ba | Selplg | MGP_SPRETEiJ_P0029259 | MGP_SPRETEiJ_P0072603 | Glycoprotein 1b, alpha polypeptide. | Selectin, platelet (p-selectin) ligand. | 0.712 |
Icam1 | Cd40lg | MGP_SPRETEiJ_P0090471 | MGP_SPRETEiJ_P0095266 | Intercellular adhesion molecule 1. | CD40 ligand. | 0.626 |
Icam1 | Gp1ba | MGP_SPRETEiJ_P0090471 | MGP_SPRETEiJ_P0029259 | Intercellular adhesion molecule 1. | Glycoprotein 1b, alpha polypeptide. | 0.557 |
Icam1 | Itgb2 | MGP_SPRETEiJ_P0090471 | MGP_SPRETEiJ_P0024712 | Intercellular adhesion molecule 1. | Integrin beta 2. | 0.999 |
Icam1 | Rdx | MGP_SPRETEiJ_P0090471 | MGP_SPRETEiJ_P0091456 | Intercellular adhesion molecule 1. | Radixin. | 0.840 |
Icam1 | Scarb2 | MGP_SPRETEiJ_P0090471 | MGP_SPRETEiJ_P0071806 | Intercellular adhesion molecule 1. | Scavenger receptor class B, member 2. | 0.657 |
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