STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rnf6Ring finger protein (C3H2C3 type) 6. (667 aa)    
Predicted Functional Partners:
Rps27a
Ribosomal protein S27A.
    
 0.849
Smad7
SMAD family member 7.
   
 0.739
Smad6
SMAD family member 6.
   
 0.739
Ube2n
Ubiquitin-conjugating enzyme E2N.
    
  0.689
MGP_SPRETEiJ_P0030876
annotation not available
    
 0.674
MGP_SPRETEiJ_P0076977
annotation not available
    
 0.674
Uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.674
MGP_SPRETEiJ_P0088294
annotation not available
    
 0.674
Ube2k
Ubiquitin-conjugating enzyme E2K.
    
 0.661
Sumo3
Small ubiquitin-like modifier 3.
    
 0.638
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.