STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Depp1DEPP1 autophagy regulator. (205 aa)    
Predicted Functional Partners:
Wfdc13
WAP four-disulfide core domain 13.
      
 0.518
Crnn
Cornulin.
      
 0.474
MGP_SPRETEiJ_P0030049
annotation not available
  
     0.466
MGP_SPRETEiJ_P0030051
annotation not available
  
     0.466
Rptn
Repetin.
      
 0.465
Ccdc171
Coiled-coil domain containing 171.
      
 0.457
Wdr38
WD repeat domain 38.
      
 0.448
Tmem140
Transmembrane protein 140.
  
     0.403
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.