STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dennd5bDENN/MADD domain containing 5B. (1274 aa)    
Predicted Functional Partners:
Dennd4c
DENN/MADD domain containing 4C.
    
0.878
Snx1
Sorting nexin 1.
     
 0.749
Snx2
Sorting nexin 2.
     
 0.734
Vps35
VPS35 retromer complex component.
   
 
  0.723
Dennd3
DENN/MADD domain containing 3.
    
0.720
Rab7
RAB7, member RAS oncogene family.
     
 0.718
Snx8
Sorting nexin 8.
     
 0.716
Dennd4b
DENN/MADD domain containing 4B.
    
0.685
Dennd4a
DENN/MADD domain containing 4A.
    
0.590
MGP_SPRETEiJ_P0047300
annotation not available
    
 
0.538
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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