STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usp47Ubiquitin specific peptidase 47. (1356 aa)    
Predicted Functional Partners:
Polb
Polymerase (DNA directed), beta.
    
 0.966
Trip12
Thyroid hormone receptor interactor 12.
   
  
 0.704
Fbxw11
F-box and WD-40 domain protein 11.
    
 
 0.687
Btrc
Beta-transducin repeat containing protein.
    
 
 0.667
Poll
Polymerase (DNA directed), lambda.
    
 0.666
Polm
Polymerase (DNA directed), mu.
    
 0.621
Dntt
Deoxynucleotidyltransferase, terminal.
    
 0.621
Usp9x
Ubiquitin specific peptidase 9, X chromosome.
   
  
0.581
Plaa
Phospholipase A2, activating protein.
   
  
 0.548
Wdr48
WD repeat domain 48.
      
 0.516
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.