STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lsm4LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated. (138 aa)    
Predicted Functional Partners:
Lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
MGP_SPRETEiJ_P0075587
annotation not available
   
 0.999
Lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
Snrpd3
Small nuclear ribonucleoprotein D3.
   
0.998
Lsm5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.998
Lsm3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.998
Lsm1
LSM1 homolog, mRNA degradation associated.
   
 0.998
Lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
0.997
Patl1
Protein associated with topoisomerase II homolog 1 (yeast).
    
 0.997
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.996
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.