STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Herpud1Homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1. (391 aa)    
Predicted Functional Partners:
Syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.848
Amfr
Autocrine motility factor receptor.
    
 
 0.745
Atf4
Activating transcription factor 4.
   
 
 0.698
Dnajb9
DnaJ heat shock protein family (Hsp40) member B9.
   
  
 0.668
Xbp1
X-box binding protein 1.
   
  
 0.604
Vcp
Valosin containing protein.
    
 
 0.579
Derl3
Der1-like domain family, member 3.
    
 
 0.576
Hspa5
Heat shock protein 5.
   
  
 0.565
Edem1
ER degradation enhancer, mannosidase alpha-like 1.
      
 0.540
Dnajc3
DnaJ heat shock protein family (Hsp40) member C3.
   
  
 0.530
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.