STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Txnl4bThioredoxin-like 4B. (149 aa)    
Predicted Functional Partners:
Snrpd3
Small nuclear ribonucleoprotein D3.
   
  0.988
Sart1
Squamous cell carcinoma antigen recognized by T cells 1.
    
 0.987
Snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 0.987
Prpf6
pre-mRNA splicing factor 6.
    
 0.987
Prpf31
pre-mRNA processing factor 31.
    
 0.987
Eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 0.986
Prpf8
pre-mRNA processing factor 8.
    
 0.985
Lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.985
MGP_SPRETEiJ_P0075587
annotation not available
   
 0.985
Lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.985
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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