STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rp9Retinitis pigmentosa 9 (human). (213 aa)    
Predicted Functional Partners:
Dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 
 0.808
Prpf8
pre-mRNA processing factor 8.
    
 
 0.781
Cwc25
CWC25 spliceosome-associated protein.
   
 
 0.724
Snw1
SNW domain containing 1.
   
 
 0.711
Prpf31
pre-mRNA processing factor 31.
   
  
 0.672
Prpf3
pre-mRNA processing factor 3.
      
 0.659
Prpf6
pre-mRNA splicing factor 6.
      
 0.615
Prpf4
pre-mRNA processing factor 4.
      
 0.612
Rbpjl
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
 0.606
MGP_SPRETEiJ_P0070841
annotation not available
    
 0.606
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.