STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rpusd4RNA pseudouridylate synthase domain containing 4. (377 aa)    
Predicted Functional Partners:
Malsu1
Mitochondrial assembly of ribosomal large subunit 1.
  
 
 0.933
Mrm3
Mitochondrial rRNA methyltransferase 3.
  
 
 0.890
Mtg1
Mitochondrial ribosome-associated GTPase 1.
   
 
 0.852
Mrm1
Mitochondrial rRNA methyltransferase 1.
  
 
 0.851
Pus7l
Pseudouridylate synthase 7-like.
    
 
 0.847
Pus7
Pseudouridylate synthase 7.
    
 
 0.847
Ngrn
Neugrin, neurite outgrowth associated.
    
 
 0.846
Mrpl17
Mitochondrial ribosomal protein L17.
   
   0.833
MGP_SPRETEiJ_P0030994
annotation not available
   
 
 0.830
Gtpbp3
GTP binding protein 3.
   
 
 0.809
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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