STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trex1Three prime repair exonuclease 1. (314 aa)    
Predicted Functional Partners:
Pan3
PAN3 poly(A) specific ribonuclease subunit.
    
 0.837
Rpn1
Ribophorin I.
    
  0.792
Pcna
Proliferating cell nuclear antigen.
  
 0.787
MGP_SPRETEiJ_P0060175
annotation not available
     
 0.586
Helz2
Helicase with zinc finger 2, transcriptional coactivator.
   
 0.566
Pnpt1
Polyribonucleotide nucleotidyltransferase 1.
   
 
 0.564
Apmap
Adipocyte plasma membrane associated protein.
   
 
 0.564
Exosc10
Exosome component 10.
   
 0.555
Fbh1
F-box DNA helicase 1.
  
 
 0.548
Samhd1
SAM domain and HD domain, 1.
   
 
 0.540
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.