Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
4930447F04Rik | 4933436I01Rik | MGP_SPRETEiJ_P0095318 | MGP_SPRETEiJ_P0095322 | RIKEN cDNA 4930447F04 gene. | RIKEN cDNA 4933436I01 gene. | 0.820 |
4930447F04Rik | Aff2 | MGP_SPRETEiJ_P0095318 | MGP_SPRETEiJ_P0095339 | RIKEN cDNA 4930447F04 gene. | AF4/FMR2 family, member 2. | 0.442 |
4930447F04Rik | Ctag2 | MGP_SPRETEiJ_P0095318 | MGP_SPRETEiJ_P0095317 | RIKEN cDNA 4930447F04 gene. | Cancer/testis antigen 2. | 0.575 |
4930447F04Rik | Fmr1 | MGP_SPRETEiJ_P0095318 | MGP_SPRETEiJ_P0095329 | RIKEN cDNA 4930447F04 gene. | Fragile X mental retardation 1. | 0.611 |
4930447F04Rik | Fmr1nb | MGP_SPRETEiJ_P0095318 | MGP_SPRETEiJ_P0095337 | RIKEN cDNA 4930447F04 gene. | Fmr1 neighbor. | 0.516 |
4930447F04Rik | MGP_SPRETEiJ_P0095321 | MGP_SPRETEiJ_P0095318 | MGP_SPRETEiJ_P0095321 | RIKEN cDNA 4930447F04 gene. | annotation not available | 0.520 |
4930447F04Rik | MGP_SPRETEiJ_P0095338 | MGP_SPRETEiJ_P0095318 | MGP_SPRETEiJ_P0095338 | RIKEN cDNA 4930447F04 gene. | annotation not available | 0.526 |
4930447F04Rik | Msh3 | MGP_SPRETEiJ_P0095318 | MGP_SPRETEiJ_P0036759 | RIKEN cDNA 4930447F04 gene. | mutS homolog 3. | 0.510 |
4930447F04Rik | Slitrk2 | MGP_SPRETEiJ_P0095318 | MGP_SPRETEiJ_P0095319 | RIKEN cDNA 4930447F04 gene. | SLIT and NTRK-like family, member 2. | 0.613 |
4930447F04Rik | Sycp1 | MGP_SPRETEiJ_P0095318 | MGP_SPRETEiJ_P0061947 | RIKEN cDNA 4930447F04 gene. | Synaptonemal complex protein 1. | 0.455 |
4933436I01Rik | 4930447F04Rik | MGP_SPRETEiJ_P0095322 | MGP_SPRETEiJ_P0095318 | RIKEN cDNA 4933436I01 gene. | RIKEN cDNA 4930447F04 gene. | 0.820 |
4933436I01Rik | Aff2 | MGP_SPRETEiJ_P0095322 | MGP_SPRETEiJ_P0095339 | RIKEN cDNA 4933436I01 gene. | AF4/FMR2 family, member 2. | 0.516 |
4933436I01Rik | Ctag2 | MGP_SPRETEiJ_P0095322 | MGP_SPRETEiJ_P0095317 | RIKEN cDNA 4933436I01 gene. | Cancer/testis antigen 2. | 0.668 |
4933436I01Rik | Fmr1 | MGP_SPRETEiJ_P0095322 | MGP_SPRETEiJ_P0095329 | RIKEN cDNA 4933436I01 gene. | Fragile X mental retardation 1. | 0.611 |
4933436I01Rik | Fmr1nb | MGP_SPRETEiJ_P0095322 | MGP_SPRETEiJ_P0095337 | RIKEN cDNA 4933436I01 gene. | Fmr1 neighbor. | 0.614 |
4933436I01Rik | MGP_SPRETEiJ_P0095321 | MGP_SPRETEiJ_P0095322 | MGP_SPRETEiJ_P0095321 | RIKEN cDNA 4933436I01 gene. | annotation not available | 0.518 |
4933436I01Rik | MGP_SPRETEiJ_P0095338 | MGP_SPRETEiJ_P0095322 | MGP_SPRETEiJ_P0095338 | RIKEN cDNA 4933436I01 gene. | annotation not available | 0.518 |
4933436I01Rik | Msh3 | MGP_SPRETEiJ_P0095322 | MGP_SPRETEiJ_P0036759 | RIKEN cDNA 4933436I01 gene. | mutS homolog 3. | 0.510 |
4933436I01Rik | Slitrk2 | MGP_SPRETEiJ_P0095322 | MGP_SPRETEiJ_P0095319 | RIKEN cDNA 4933436I01 gene. | SLIT and NTRK-like family, member 2. | 0.636 |
4933436I01Rik | Sycp1 | MGP_SPRETEiJ_P0095322 | MGP_SPRETEiJ_P0061947 | RIKEN cDNA 4933436I01 gene. | Synaptonemal complex protein 1. | 0.455 |
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