STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YwqDCapsular exopolysaccharide family. (803 aa)    
Predicted Functional Partners:
SDL04929.1
Polysaccharide export outer membrane protein.
 
 0.993
SDL52722.1
Polysaccharide export outer membrane protein.
 
 0.979
SDL08924.1
Polysaccharide export outer membrane protein.
 
 0.977
WcaJ
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.954
YwqE_1
Tyrosine-protein phosphatase YwqE.
 
  
 0.931
YwqE_2
Tyrosine-protein phosphatase YwqE.
  
 0.854
CapD_2
UDP-glucose 4-epimerase; NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
  
 0.840
CapD_1
UDP-glucose 4-epimerase; NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
  
 0.837
SDL05015.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.711
HypA
Hydrogenase nickel incorporation protein HypA/HybF.
   
   0.672
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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