STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK91550.1Starch-binding associating with outer membrane. (524 aa)    
Predicted Functional Partners:
atpE
ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.925
FepA_1
Iron complex outermembrane recepter protein.
 
     0.921
SDL06271.1
Starch-binding associating with outer membrane.
  
     0.763
SDL06292.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.751
SDL29826.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.625
SDL10729.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.605
SDL47768.1
Iron complex outermembrane recepter protein.
  
     0.595
CirA_4
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.577
SDK91000.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.566
SDL37086.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.551
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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