STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SigM_2RNA polymerase sigma-70 factor, ECF subfamily. (169 aa)    
Predicted Functional Partners:
SDK92413.1
Hypothetical protein.
   
   0.790
SDK92428.1
Ankyrin repeat-containing protein.
  
    0.776
SDK92448.1
Acyltransferase family protein.
 
     0.768
SigM_3
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.750
FecI_1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.746
SigK_2
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.744
RpoE_6
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.739
RpoE_2
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.729
SigM_5
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.723
SigX
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.711
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.