STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK95295.1FecR protein. (391 aa)    
Predicted Functional Partners:
SDK95312.1
TonB-linked outer membrane protein, SusC/RagA family.
 
    0.799
SDL31647.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.754
FecI_2
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.704
SDK95330.1
SusD family protein.
 
     0.662
FecI_1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.633
SDL48310.1
TonB-linked outer membrane protein, SusC/RagA family.
  
    0.556
SDL42153.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.550
SDL39817.1
Susd and RagB outer membrane lipoprotein.
  
     0.516
SDL50838.1
TonB-linked outer membrane protein, SusC/RagA family.
  
    0.516
FepA_2
TonB-linked outer membrane protein, SusC/RagA family.
 
    0.514
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.