STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cph1_1Bacteriophytochrome (light-regulated signal transduction histidine kinase). (730 aa)    
Predicted Functional Partners:
Cph1_2
Bacteriophytochrome (light-regulated signal transduction histidine kinase).
  
  
 
0.917
SDL75624.1
Response regulator receiver domain-containing protein.
 
 
 0.917
LuxQ_1
Signal transduction histidine kinase.
 
0.890
LuxQ_4
Signal transduction histidine kinase.
 
 
0.879
SDL50961.1
PAS domain S-box-containing protein.
 
 
 
 0.830
RpfC
Signal transduction histidine kinase.
 
 
0.818
LuxQ_3
His Kinase A (phospho-acceptor) domain-containing protein.
 
 
 
0.801
DivK_2
Response regulator receiver domain-containing protein.
 
 
   0.740
BarA
PAS domain S-box-containing protein.
 
 
 
0.706
SDL12032.1
Heme oxygenase.
 
   
 0.651
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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