STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK97863.1Bacteroides conjugative transposon TraK protein. (206 aa)    
Predicted Functional Partners:
SDK97846.1
Bacteroides conjugative transposon TraJ protein.
 
   
 0.945
SDK97791.1
Hypothetical protein.
 
     0.927
TraC_3
Bacteroides conjugation system ATPase, TraG family.
 
   
 0.903
SDK97757.1
Protein of unknown function.
 
     0.898
SDK97739.1
Protein of unknown function.
 
     0.895
VirB4
Bacteroides conjugation system ATPase, TraG family.
 
   
 0.796
SDL51299.1
Bacteroides conjugative transposon TraJ protein.
 
   
 0.794
TraC_1
Bacteroides conjugation system ATPase, TraG family.
 
   
 0.792
SDK97916.1
Bacteroides conjugative transposon TraN protein.
 
   
 0.787
SDL51209.1
Bacteroides conjugative transposon TraN protein.
 
   
 0.787
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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