STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL00259.1Protein of unknown function (DU1801). (144 aa)    
Predicted Functional Partners:
SDL00311.1
Hypothetical protein.
       0.777
SDL00285.1
Hypothetical protein.
       0.774
SDL00334.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
     0.754
SDL00247.1
Hypothetical protein.
       0.566
CatD_2
Pimeloyl-ACP methyl ester carboxylesterase.
       0.526
SDL00235.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
     0.510
SDL00213.1
PhnB protein.
 
     0.495
SDL00377.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
     0.470
SDL00394.1
Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family.
 
     0.453
SDL00154.1
Glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase.
 
     0.425
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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