Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDK86146.1 | SDL02922.1 | SAMN05192578_1012 | SAMN05192578_101925 | Phosphoribosyl-ATP pyrophosphohydrolase. | Hypothetical protein. | 0.516 |
SDL01950.1 | SDL02922.1 | SAMN05192578_101871 | SAMN05192578_101925 | Aspartyl protease. | Hypothetical protein. | 0.500 |
SDL02912.1 | SDL02922.1 | SAMN05192578_101924 | SAMN05192578_101925 | Hypothetical protein. | Hypothetical protein. | 0.452 |
SDL02922.1 | SDK86146.1 | SAMN05192578_101925 | SAMN05192578_1012 | Hypothetical protein. | Phosphoribosyl-ATP pyrophosphohydrolase. | 0.516 |
SDL02922.1 | SDL01950.1 | SAMN05192578_101925 | SAMN05192578_101871 | Hypothetical protein. | Aspartyl protease. | 0.500 |
SDL02922.1 | SDL02912.1 | SAMN05192578_101925 | SAMN05192578_101924 | Hypothetical protein. | Hypothetical protein. | 0.452 |
SDL02922.1 | SDL27625.1 | SAMN05192578_101925 | SAMN05192578_102214 | Hypothetical protein. | Zinc transporter ZupT. | 0.562 |
SDL02922.1 | SDL55313.1 | SAMN05192578_101925 | SAMN05192578_104364 | Hypothetical protein. | RNA polymerase Rpb6. | 0.837 |
SDL02922.1 | pnp | SAMN05192578_101925 | SAMN05192578_10782 | Hypothetical protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.530 |
SDL02922.1 | rpoA | SAMN05192578_101925 | SAMN05192578_106131 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.837 |
SDL02922.1 | rpoB | SAMN05192578_101925 | SAMN05192578_10330 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.841 |
SDL02922.1 | rpoC | SAMN05192578_101925 | SAMN05192578_10331 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.872 |
SDL02922.1 | rpsO | SAMN05192578_101925 | SAMN05192578_10783 | Hypothetical protein. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.566 |
SDL27625.1 | SDL02922.1 | SAMN05192578_102214 | SAMN05192578_101925 | Zinc transporter ZupT. | Hypothetical protein. | 0.562 |
SDL55313.1 | SDL02922.1 | SAMN05192578_104364 | SAMN05192578_101925 | RNA polymerase Rpb6. | Hypothetical protein. | 0.837 |
SDL55313.1 | rpoA | SAMN05192578_104364 | SAMN05192578_106131 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.989 |
SDL55313.1 | rpoB | SAMN05192578_104364 | SAMN05192578_10330 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.983 |
SDL55313.1 | rpoC | SAMN05192578_104364 | SAMN05192578_10331 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.958 |
SDL55313.1 | rpsO | SAMN05192578_104364 | SAMN05192578_10783 | RNA polymerase Rpb6. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.876 |
pnp | SDL02922.1 | SAMN05192578_10782 | SAMN05192578_101925 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Hypothetical protein. | 0.530 |
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