STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL25337.1Choline dehydrogenase. (561 aa)    
Predicted Functional Partners:
SDL25299.1
Gluconate 2-dehydrogenase subunit 3.
 
 
 0.950
YegT
Nucleoside transporter.
 
     0.898
IolG_6
Tat (twin-arginine translocation) pathway signal sequence.
 
    0.800
SDL66297.1
Gluconate 2-dehydrogenase subunit 3.
 
 
 0.768
SDL28170.1
Protein of unknown function.
 
     0.747
IolE
Sugar phosphate isomerase/epimerase.
 
     0.682
SDL80282.1
Cytochrome c.
   
 
 0.624
SDK98696.1
Gluconate 2-dehydrogenase subunit 3.
 
     0.607
SDL15851.1
WD40 repeat.
    
 0.603
SDL71939.1
WD domain-containing protein, G-beta repeat-containing protein.
    
 0.603
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.