STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL29451.1Periplasmic chaperone for outer membrane proteins Skp. (177 aa)    
Predicted Functional Partners:
SDL29435.1
Beta-barrel assembly machine subunit BamA.
 
  
 0.933
SDL29464.1
Periplasmic chaperone for outer membrane proteins Skp.
 
     0.802
SDL55294.1
Beta-barrel assembly machine subunit BamD.
 
   
 0.756
LpxH
UDP-2,3-diacylglucosamine hydrolase.
  
     0.743
SDL86386.1
Protein of unknown function.
  
     0.740
ZraR_3
Response regulator receiver domain-containing protein.
  
     0.736
SDL80145.1
Protein of unknown function.
  
     0.735
KinD
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.725
SDL60760.1
Ig-like domain-containing protein.
  
     0.702
SDL72368.1
Hypothetical protein.
  
     0.697
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.