Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FabD | FabF | SAMN05192578_104340 | SAMN05192578_106166 | [acyl-carrier-protein] S-malonyltransferase. | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.999 |
FabD | SDL24422.1 | SAMN05192578_104340 | SAMN05192578_10260 | [acyl-carrier-protein] S-malonyltransferase. | Hypothetical protein. | 0.474 |
FabD | fabZ | SAMN05192578_104340 | SAMN05192578_11058 | [acyl-carrier-protein] S-malonyltransferase. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily. | 0.927 |
FabF | FabD | SAMN05192578_106166 | SAMN05192578_104340 | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | [acyl-carrier-protein] S-malonyltransferase. | 0.999 |
FabF | SDL24422.1 | SAMN05192578_106166 | SAMN05192578_10260 | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | Hypothetical protein. | 0.451 |
FabF | fabZ | SAMN05192578_106166 | SAMN05192578_11058 | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily. | 0.971 |
Hmp_1 | SDL24422.1 | SAMN05192578_101584 | SAMN05192578_10260 | Ferredoxin. | Hypothetical protein. | 0.410 |
SDL24405.1 | SDL24422.1 | SAMN05192578_10259 | SAMN05192578_10260 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SDL24405.1 | SDL24444.1 | SAMN05192578_10259 | SAMN05192578_10261 | Hypothetical protein. | TIGR01619 family protein. | 0.727 |
SDL24405.1 | SDL24460.1 | SAMN05192578_10259 | SAMN05192578_10262 | Hypothetical protein. | AraC-type DNA-binding protein. | 0.474 |
SDL24422.1 | FabD | SAMN05192578_10260 | SAMN05192578_104340 | Hypothetical protein. | [acyl-carrier-protein] S-malonyltransferase. | 0.474 |
SDL24422.1 | FabF | SAMN05192578_10260 | SAMN05192578_106166 | Hypothetical protein. | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.451 |
SDL24422.1 | Hmp_1 | SAMN05192578_10260 | SAMN05192578_101584 | Hypothetical protein. | Ferredoxin. | 0.410 |
SDL24422.1 | SDL24405.1 | SAMN05192578_10260 | SAMN05192578_10259 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SDL24422.1 | SDL24444.1 | SAMN05192578_10260 | SAMN05192578_10261 | Hypothetical protein. | TIGR01619 family protein. | 0.727 |
SDL24422.1 | SDL24460.1 | SAMN05192578_10260 | SAMN05192578_10262 | Hypothetical protein. | AraC-type DNA-binding protein. | 0.474 |
SDL24422.1 | fabZ | SAMN05192578_10260 | SAMN05192578_11058 | Hypothetical protein. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily. | 0.443 |
SDL24422.1 | sbcD | SAMN05192578_10260 | SAMN05192578_10214 | Hypothetical protein. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.420 |
SDL24444.1 | SDL24405.1 | SAMN05192578_10261 | SAMN05192578_10259 | TIGR01619 family protein. | Hypothetical protein. | 0.727 |
SDL24444.1 | SDL24422.1 | SAMN05192578_10261 | SAMN05192578_10260 | TIGR01619 family protein. | Hypothetical protein. | 0.727 |
page 1 of 2