STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MacB_5FtsX-like permease family protein. (814 aa)    
Predicted Functional Partners:
MacB_9
Putative ABC transport system ATP-binding protein.
 
 
 0.870
MacB_1
ABC-type lipoprotein export system, ATPase component.
 
 
 0.868
SDL36289.1
HlyD family secretion protein.
 
   0.856
ZraS_1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.777
SDL36312.1
Outer membrane protein.
 
   0.731
ZraR_1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
  
     0.648
MacB_4
Putative ABC transport system permease protein.
 
   
0.634
LolD_3
Putative ABC transport system ATP-binding protein.
 
 
 0.530
LolD_2
Putative ABC transport system ATP-binding protein.
 
 
 0.527
MacA_1
Multidrug resistance efflux pump.
 
  
 0.479
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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