STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL39923.1cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (193 aa)    
Predicted Functional Partners:
GalE_1
Dihydroflavonol-4-reductase.
 
    0.841
SDL72926.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
     0.774
SDL39877.1
Hypothetical protein.
       0.503
CycA_1
Cytochrome c oxidase cbb3-type subunit 2.
  
  
 0.467
SDL53281.1
Hypothetical protein.
  
 
 0.458
LuxQ_4
Signal transduction histidine kinase.
  
 
 0.454
SDL60355.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
    
  0.439
SDL39937.1
Cytochrome c oxidase cbb3-type subunit 1.
  
  
 0.426
BarA
PAS domain S-box-containing protein.
  
 
 0.415
LuxQ_1
Signal transduction histidine kinase.
  
 
 0.402
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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