STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CobC_1Alpha-ribazole phosphatase; Belongs to the phosphoglycerate mutase family. (198 aa)    
Predicted Functional Partners:
LsrK
Autoinducer 2 (AI-2) kinase.
 
  
 0.936
XylB_1
Sugar (pentulose or hexulose) kinase.
 
  
 0.921
SerA_2
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.874
CsbX
Polyol permease family.
 
     0.848
UgpQ
Glycerophosphoryl diester phosphodiesterase.
 
    0.755
SDL42224.1
FAD dependent oxidoreductase.
 
    0.719
ExuT_2
MFS transporter, ACS family, hexuronate transporter.
 
     0.618
SDL42115.1
3',5'-cyclic AMP phosphodiesterase CpdA.
 
    0.471
SDL42245.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
       0.416
SDL42130.1
Starch-binding associating with outer membrane.
 
     0.410
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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