STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL51299.1Bacteroides conjugative transposon TraJ protein. (399 aa)    
Predicted Functional Partners:
SDL51280.1
Bacteroides conjugative transposon TraK protein.
 
   
 0.952
VirB4
Bacteroides conjugation system ATPase, TraG family.
 
   
 0.947
SDL51373.1
Hypothetical protein.
 
     0.946
SDL51420.1
Protein of unknown function.
 
     0.869
SDL51539.1
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase.
 
     0.813
SDL51511.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
     0.812
SDL82628.1
Bacteroides conjugative transposon TraK protein.
 
   
 0.797
SDK97863.1
Bacteroides conjugative transposon TraK protein.
 
   
 0.794
SDL82479.1
Protein of unknown function.
 
   
 0.792
TraC_3
Bacteroides conjugation system ATPase, TraG family.
 
   
 0.791
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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