STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gfo_4Predicted dehydrogenase. (456 aa)    
Predicted Functional Partners:
SDL59858.1
Protein of unknown function.
 
     0.908
SDL38542.1
Protein of unknown function.
 
     0.774
SDL48271.1
Protein of unknown function.
 
     0.760
SDL89646.1
Protein of unknown function.
  
     0.756
SDK87053.1
Protein of unknown function.
 
     0.653
SDL29870.1
Protein of unknown function.
 
     0.652
SDL13114.1
Protein of unknown function.
 
     0.643
SDL74790.1
Sugar phosphate isomerase/epimerase.
 
    0.575
YdgJ_3
Predicted dehydrogenase.
 
     0.543
SDL28170.1
Protein of unknown function.
 
     0.534
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.