Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FdhB1 | SDL71425.1 | SAMN05192578_10774 | SAMN05192578_10770 | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | Hypothetical protein. | 0.987 |
FdhB1 | SDL71449.1 | SAMN05192578_10774 | SAMN05192578_10771 | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | Cytochrome C oxidase, cbb3-type, subunit III. | 0.986 |
FdhB1 | SDL71467.1 | SAMN05192578_10774 | SAMN05192578_10772 | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | Protein of unknown function. | 0.986 |
FdhB1 | SDL71484.1 | SAMN05192578_10774 | SAMN05192578_10773 | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | Quinol:cytochrome c oxidoreductase quinone-binding subunit 1. | 0.997 |
FdhB1 | SDL71525.1 | SAMN05192578_10774 | SAMN05192578_10775 | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | Cytochrome c553. | 0.990 |
SDL71425.1 | FdhB1 | SAMN05192578_10770 | SAMN05192578_10774 | Hypothetical protein. | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | 0.987 |
SDL71425.1 | SDL71449.1 | SAMN05192578_10770 | SAMN05192578_10771 | Hypothetical protein. | Cytochrome C oxidase, cbb3-type, subunit III. | 0.992 |
SDL71425.1 | SDL71467.1 | SAMN05192578_10770 | SAMN05192578_10772 | Hypothetical protein. | Protein of unknown function. | 0.992 |
SDL71425.1 | SDL71484.1 | SAMN05192578_10770 | SAMN05192578_10773 | Hypothetical protein. | Quinol:cytochrome c oxidoreductase quinone-binding subunit 1. | 0.992 |
SDL71425.1 | SDL71525.1 | SAMN05192578_10770 | SAMN05192578_10775 | Hypothetical protein. | Cytochrome c553. | 0.982 |
SDL71425.1 | rplK | SAMN05192578_10770 | SAMN05192578_10326 | Hypothetical protein. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.961 |
SDL71425.1 | rpsG | SAMN05192578_10770 | SAMN05192578_101108 | Hypothetical protein. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.961 |
SDL71425.1 | rpsJ | SAMN05192578_10770 | SAMN05192578_101106 | Hypothetical protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.961 |
SDL71425.1 | rpsL | SAMN05192578_10770 | SAMN05192578_101109 | Hypothetical protein. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.961 |
SDL71425.1 | tsf | SAMN05192578_10770 | SAMN05192578_103154 | Hypothetical protein. | Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.980 |
SDL71449.1 | FdhB1 | SAMN05192578_10771 | SAMN05192578_10774 | Cytochrome C oxidase, cbb3-type, subunit III. | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | 0.986 |
SDL71449.1 | SDL71425.1 | SAMN05192578_10771 | SAMN05192578_10770 | Cytochrome C oxidase, cbb3-type, subunit III. | Hypothetical protein. | 0.992 |
SDL71449.1 | SDL71467.1 | SAMN05192578_10771 | SAMN05192578_10772 | Cytochrome C oxidase, cbb3-type, subunit III. | Protein of unknown function. | 0.992 |
SDL71449.1 | SDL71484.1 | SAMN05192578_10771 | SAMN05192578_10773 | Cytochrome C oxidase, cbb3-type, subunit III. | Quinol:cytochrome c oxidoreductase quinone-binding subunit 1. | 0.993 |
SDL71449.1 | SDL71525.1 | SAMN05192578_10771 | SAMN05192578_10775 | Cytochrome C oxidase, cbb3-type, subunit III. | Cytochrome c553. | 0.987 |
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