STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL78819.1Hypothetical protein. (533 aa)    
Predicted Functional Partners:
SDL78796.1
PD-(D/E)XK nuclease superfamily protein.
 
     0.962
DpnM
DNA adenine methylase.
       0.759
SDK98073.1
Type I restriction enzyme, S subunit.
  
  
 0.720
SDL43058.1
Type I restriction enzyme R protein N terminus (HSDR_N).
  
  
 0.675
HsdR
Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
  
 0.541
VspIM
N-6 DNA Methylase.
  
  
 0.466
SDL78780.1
Protein of unknown function.
       0.427
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.