STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL82628.1Bacteroides conjugative transposon TraK protein. (206 aa)    
Predicted Functional Partners:
SDL82664.1
Bacteroides conjugative transposon TraM protein.
 
   
 0.941
SDL82610.1
Hypothetical protein.
 
   
 0.937
SDL82479.1
Protein of unknown function.
 
   
 0.928
TraC_1
Bacteroides conjugation system ATPase, TraG family.
 
  
 0.927
SDL82689.1
Bacteroides conjugative transposon TraN protein.
 
   
 0.927
SDL82458.1
Protein of unknown function.
 
     0.885
SDL82401.1
Chromosome partitioning protein.
 
     0.881
SDL82717.1
Type IV secretion-system coupling protein DNA-binding domain-containing protein.
 
     0.878
SDL82381.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
     0.864
SDL51299.1
Bacteroides conjugative transposon TraJ protein.
 
   
 0.797
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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