STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SufDIron-regulated ABC transporter permease protein SufD. (443 aa)    
Predicted Functional Partners:
SufC
Iron-regulated ABC transporter ATPase subunit SufC.
 
 0.998
SufS
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.989
SufB
Iron-regulated ABC transporter membrane component SufB.
   
0.923
SDL37470.1
FeS assembly SUF system protein.
   
 0.866
SufE
Cysteine desulfuration protein SufE.
 
 
 0.813
SDL88691.1
Selenocysteine lyase/Cysteine desulfurase.
  
 
 0.782
SDL13278.1
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.527
ErpA
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.497
SDL48487.1
Metal-sulfur cluster biosynthetic enzyme.
 
   
 0.492
SDL84587.1
MFS transporter, DHA3 family, macrolide efflux protein.
       0.407
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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